Microbiology Survey in Surface Waters in Latin America

Contact: Magaly Toro, PhD.
mtoroiba@umd.edu

Overview

This research collaborative project started in late 2018 as a survey of Salmonella in water in Chile and México with the collaboration of local Universities: Universidad de Chile, Universidad Andrés Bello (Chile), and Universidad Autónoma de México (UNAM). In late 2022, two teams in Brazil joined the effort: Universidade Federal do Rio de Janeiro and Universidade Federal da Paraíba, and the Universidad Católica de Chile replaced the Universidad Andrés Bello. The project has expanded from its beginnings, and in 2021, teams started to collect samples for a Microbiome study of surface waters. In 2023-2024, teams are also running a pilot study isolating Listeria monocytogenes from the same samples. This project is funded by the cooperative award between the FDA Human Foods Program (HFP) and JIFSAN.

Purpose of the Project

One of the main missions of the US FDA is to protect the food supply and consumers' health in the country. Under this goal, the GenomeTrakr network was created to provide sequencing information on foodborne pathogens, improving foodborne outbreak investigation speed and accuracy and reducing the number of affected people. Considering that most of the US food supply is imported, having information on foodborne pathogens originating in grow-producing countries is fundamental to having a successful system. In particular, Latin America is a region where most of the produce imported to the US is grown. Surface water is one of the main systems where the environment and human and animal activities converge; therefore, surveying waters would allow us to have a picture of the ecosystem of a region efficiently. As Salmonella is one of the main foodborne pathogens in the world, this study first aimed to provide information about the diversity of Salmonella in surface waters linked to agricultural areas in Latin America.

Achievements

Over 4,700 samples have been collected for surveying Salmonella in surface waters linked to agriculture in the three countries, and over 7,000 Salmonella isolates have been collected. Salmonella isolates are sequenced, and data is publicly available on the NCBI Pathogen Detection browser. To date, over 4,700 Salmonella genomes are available. Additionally, over 200 metagenomics sequencing have been processed, data has been generated for analysis, and over 450 Listeria monocytogenes isolates have been sequenced to date. Several research papers and a meta-analysis review have been published in peer-reviewed journals: Rocha et al., 2022; Toro et al., 2022; Ballesteros-Nova et al., 2022; and Chen et al., 2024. Currently, two more publications have been submitted for consideration for publication, and five are in preparation. The group has presented seven technical oral presentations at scientific meetings and over 40 posters at local and international scientific meetings, including the ASM Microbe and IAFP annual meetings. Moreover, the PIs in each country have also been invited to present talks at local and international meetings. Finally, this research has aided in catalyzing interaction among the participants' principal investigators, who are embarking on new collaborations.

International Collaborators

Andrea Moreno Switt, PhD. PI, U. Católica de Chile
Angelica Reyes Jara, PhD. PI, U. de Chile
Enrique Delgado Suárez, PhD. PI, U. Autónoma de México (UNAM)
Celso Oliveira, PhD. PI, U. F. da Paraíba
Raquel Bonelli, PhD. PI, U. F. do Rio de Janeiro
Aiko Adell, PhD. Collaborator, Universidad Andrés Bello, Chile

From left to right: Dr. Celso Oliveira (UFPB, Brazil), Dr. Magaly Toro (JIFSAN/UMD, US) and Dr. Raquel Bonelli (UFRJ, Brazil), at IAFP2023, Toronto, Canada.

From left to right:
Dr. Celso Oliveira (UFPB, Brazil),
Dr. Magaly Toro (JIFSAN/UMD, US)
and Dr. Raquel Bonelli (UFRJ, Brazil),
at IAFP2023, Toronto, Canada.

Dr. Enrique Delgado-Suarez (UNAM Mexico), at IAFP 2023, Toronto, Canada

Dr. Enrique Delgado-Suarez (UNAM Mexico), at IAFP 2023, Toronto, Canada

From left to right: Dr. Angelica Reyes-Jara (UCh, Chile), Dr. Magaly Toro (JIFSAN/UMD, US), and Dr. Aiko Adell (UNAB, Chile), IAFP2023, Toronto, Canada.

From left to right: Dr. Angelica Reyes-Jara (UCh, Chile), Dr. Magaly Toro (JIFSAN/UMD, US), and Dr. Aiko Adell (UNAB, Chile), IAFP2023, Toronto, Canada.

Dr. Andrea Moreno-Switt (PUC, Chile), at IAFP 2023, Toronto, Canada.

Dr. Andrea Moreno-Switt (PUC, Chile), at IAFP 2023, Toronto, Canada.